New World Little Gardens

I need to replant my little gardens but a lot have the roots growing through the little pots should I just plant them in there pots so I don't break the roots?

You can either plant the whole pot or to separate the seedlings out and plant them individually, water your seedlings before you start, as moist soil will cling to the roots, protecting them from damage and drying out. Then, gently tease apart the seedling roots to separate them, before re-potting. Find out how to re-pot your seedlings here.